Detailed information of SNP:
|
SNP ID:
sf0110799569(Gbrowse)
Chromosome: chr01 Position: 10799569 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1380 | 88.04% | 11.96% |
| All Indica | 770 | 83.12% | 16.88% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 61 | 54.10% | 45.90% |
| Indica I | 353 | 80.45% | 19.55% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 204 | 74.02% | 25.98% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0110799569 | G->A | INTERGENIC | None |