Detailed information of SNP:
|
SNP ID:
sf0110863646(Gbrowse)
Chromosome: chr01 Position: 10863646 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1367 | 93.20% | 6.80% |
| All Indica | 794 | 99.24% | 0.76% |
| All Japonica | 495 | 84.24% | 15.76% |
| Aus | 30 | 96.67% | 3.33% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 209 | 99.04% | 0.96% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 334 | 97.60% | 2.40% |
| Tropical Japonica | 93 | 41.94% | 58.06% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 34 | 82.35% | 17.65% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0110863646 | G->A | LOC_Os01g19210(LOC_Os01g19210.1) | INTRON |