Detailed information of SNP:
|
SNP ID:
sf0110927612(Gbrowse)
Chromosome: chr01 Position: 10927612 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1353 | 88.40% | 11.60% |
| All Indica | 736 | 79.62% | 20.38% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 352 | 95.17% | 4.83% |
| Indica II | 189 | 60.85% | 39.15% |
| Indica Intermediate | 195 | 69.74% | 30.26% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0110927612 | T->C | LOC_Os01g19310(LOC_Os01g19310.1) | Non-Synonymous SNP |