Detailed information of SNP:
|
SNP ID:
sf0111063029(Gbrowse)
Chromosome: chr01 Position: 11063029 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 78.70% | 21.30% |
| All Indica | 798 | 85.09% | 14.91% |
| All Japonica | 497 | 66.80% | 33.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 79.68% | 20.32% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 90.75% | 9.25% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0111063029 | C->T | INTERGENIC | None |