Detailed information of SNP:
|
SNP ID:
sf0111137654(Gbrowse)
Chromosome: chr01 Position: 11137654 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1368 | 97.88% | 2.12% |
| All Indica | 782 | 99.87% | 0.13% |
| All Japonica | 466 | 94.42% | 5.58% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 361 | 100.00% | 0.00% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 329 | 100.00% | 0.00% |
| Tropical Japonica | 78 | 71.79% | 28.21% |
| Japonica Intermediate | 59 | 93.22% | 6.78% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0111137654 | T->C | INTERGENIC | None |