Detailed information of SNP:
|
SNP ID:
sf0111173867(Gbrowse)
Chromosome: chr01 Position: 11173867 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1249 | 95.28% | 4.72% |
| All Indica | 654 | 91.13% | 8.87% |
| All Japonica | 492 | 100.00% | 0.00% |
| Aus | 50 | 100.00% | 0.00% |
| Indica I | 306 | 93.46% | 6.54% |
| Indica II | 181 | 93.92% | 6.08% |
| Indica Intermediate | 167 | 83.83% | 16.17% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0111173867 | T->C | INTERGENIC | None |