Detailed information of SNP:
|
SNP ID:
sf0111183455(Gbrowse)
Chromosome: chr01 Position: 11183455 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 94.33% | 5.67% |
| All Indica | 778 | 91.52% | 8.48% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 65 | 89.23% | 10.77% |
| Indica I | 367 | 91.83% | 8.17% |
| Indica II | 206 | 89.32% | 10.68% |
| Indica Intermediate | 205 | 93.17% | 6.83% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0111183455 | G->A | LOC_Os01g19720(LOC_Os01g19720.1) | Non-Synonymous SNP |