Detailed information of SNP:
|
SNP ID:
sf0111192636(Gbrowse)
Chromosome: chr01 Position: 11192636 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1335 | 91.54% | 8.46% |
| All Indica | 767 | 93.87% | 6.13% |
| All Japonica | 452 | 86.73% | 13.27% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 351 | 90.60% | 9.40% |
| Indica II | 205 | 95.12% | 4.88% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 321 | 98.75% | 1.25% |
| Tropical Japonica | 73 | 54.79% | 45.21% |
| Japonica Intermediate | 58 | 60.34% | 39.66% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 36 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0111192636 | C->A | INTERGENIC | None |