Detailed information of SNP:
|
SNP ID:
sf0111259217(Gbrowse)
Chromosome: chr01 Position: 11259217 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1325 | 94.94% | 5.06% |
| All Indica | 774 | 99.48% | 0.52% |
| All Japonica | 430 | 86.51% | 13.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 357 | 99.72% | 0.28% |
| Indica II | 208 | 99.52% | 0.48% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 284 | 98.94% | 1.06% |
| Tropical Japonica | 88 | 56.82% | 43.18% |
| Japonica Intermediate | 58 | 70.69% | 29.31% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0111259217 | C->T | LOC_Os01g19850(LOC_Os01g19850.1) | INTRON |