Detailed information of SNP:
|
SNP ID:
sf0111291079(Gbrowse)
Chromosome: chr01 Position: 11291079 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1351 | 54.70% | 45.30% |
| All Indica | 741 | 26.59% | 73.41% |
| All Japonica | 496 | 97.38% | 2.62% |
| Aus | 63 | 42.86% | 57.14% |
| Indica I | 345 | 25.80% | 74.20% |
| Indica II | 204 | 37.75% | 62.25% |
| Indica Intermediate | 192 | 16.15% | 83.85% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 37 | 72.97% | 27.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0111291079 | T->C | INTERGENIC | None |