Detailed information of SNP:
|
SNP ID:
sf0111314618(Gbrowse)
Chromosome: chr01 Position: 11314618 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 55.60% | 44.40% |
| All Indica | 790 | 29.62% | 70.38% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 368 | 29.62% | 70.38% |
| Indica II | 212 | 39.15% | 60.85% |
| Indica Intermediate | 210 | 20.00% | 80.00% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0111314618 | C->T | INTERGENIC | None |