Detailed information of SNP:
|
SNP ID:
sf0111346679(Gbrowse)
Chromosome: chr01 Position: 11346679 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 50.14% | 49.86% |
| All Indica | 796 | 21.98% | 78.02% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 22.40% | 77.60% |
| Indica II | 212 | 35.85% | 64.15% |
| Indica Intermediate | 209 | 7.18% | 92.82% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0111346679 | C->T | INTERGENIC | None |