Detailed information of SNP:
|
SNP ID:
sf0111347672(Gbrowse)
Chromosome: chr01 Position: 11347672 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 54.34% | 45.66% |
| All Indica | 785 | 81.53% | 18.47% |
| All Japonica | 496 | 4.84% | 95.16% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 75.55% | 24.45% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 208 | 91.83% | 8.17% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0111347672 | G->A | INTERGENIC | None |