Detailed information of SNP:
|
SNP ID:
sf0111405382(Gbrowse)
Chromosome: chr01 Position: 11405382 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 78.20% | 21.80% |
| All Indica | 781 | 67.61% | 32.39% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 65 | 58.46% | 41.54% |
| Indica I | 366 | 69.40% | 30.60% |
| Indica II | 209 | 65.07% | 34.93% |
| Indica Intermediate | 206 | 66.99% | 33.01% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0111405382 | G->A | LOC_Os01g20090(LOC_Os01g20090.1) | Synonymous |