Detailed information of SNP:
|
SNP ID:
sf0111430797(Gbrowse)
Chromosome: chr01 Position: 11430797 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 93.25% | 6.75% |
| All Indica | 796 | 99.62% | 0.38% |
| All Japonica | 475 | 81.89% | 18.11% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 329 | 95.74% | 4.26% |
| Tropical Japonica | 87 | 47.13% | 52.87% |
| Japonica Intermediate | 59 | 55.93% | 44.07% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0111430797 | C->T | INTERGENIC | None |