Detailed information of SNP:
|
SNP ID:
sf0111584777(Gbrowse)
Chromosome: chr01 Position: 11584777 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1290 | 92.17% | 7.83% |
| All Indica | 678 | 86.43% | 13.57% |
| All Japonica | 494 | 98.99% | 1.01% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 311 | 84.24% | 15.76% |
| Indica II | 206 | 98.54% | 1.46% |
| Indica Intermediate | 161 | 75.16% | 24.84% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 94.59% | 5.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0111584777 | C->T | LOC_Os01g20780(LOC_Os01g20780.1) | Synonymous |