Detailed information of SNP:
|
SNP ID:
sf0111638708(Gbrowse)
Chromosome: chr01 Position: 11638708 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1253 | 50.92% | 49.08% |
| All Indica | 653 | 86.06% | 13.94% |
| All Japonica | 495 | 3.43% | 96.57% |
| Aus | 57 | 59.65% | 40.35% |
| Indica I | 298 | 91.61% | 8.39% |
| Indica II | 182 | 72.53% | 27.47% |
| Indica Intermediate | 173 | 90.75% | 9.25% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 93 | 7.53% | 92.47% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 12 | 50.00% | 50.00% |
| Intermediate | 36 | 52.78% | 47.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0111638708 | G->T | INTERGENIC | None |