Detailed information of SNP:
|
SNP ID:
sf0111640628(Gbrowse)
Chromosome: chr01 Position: 11640628 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1342 | 93.37% | 6.63% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 421 | 81.00% | 19.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 288 | 98.26% | 1.74% |
| Tropical Japonica | 75 | 21.33% | 78.67% |
| Japonica Intermediate | 58 | 72.41% | 27.59% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0111640628 | G->A | INTERGENIC | None |