Detailed information of SNP:
|
SNP ID:
sf0111703465(Gbrowse)
Chromosome: chr01 Position: 11703465 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1269 | 94.64% | 5.36% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 351 | 81.48% | 18.52% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 229 | 73.36% | 26.64% |
| Tropical Japonica | 70 | 100.00% | 0.00% |
| Japonica Intermediate | 52 | 92.31% | 7.69% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0111703465 | T->C | LOC_Os01g20950(LOC_Os01g20950.1) | Non-Synonymous SNP |