Detailed information of SNP:
|
SNP ID:
sf0111724351(Gbrowse)
Chromosome: chr01 Position: 11724351 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 58.17% | 41.83% |
| All Indica | 770 | 90.78% | 9.22% |
| All Japonica | 495 | 3.43% | 96.57% |
| Aus | 58 | 87.93% | 12.07% |
| Indica I | 361 | 90.30% | 9.70% |
| Indica II | 206 | 90.78% | 9.22% |
| Indica Intermediate | 203 | 91.63% | 8.37% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 93 | 8.60% | 91.40% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 12 | 66.67% | 33.33% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0111724351 | T->C | LOC_Os01g21000(LOC_Os01g21000.1) | Synonymous |