Detailed information of SNP:
|
SNP ID:
sf0111808273(Gbrowse)
Chromosome: chr01 Position: 11808273 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 78.83% | 21.17% |
| All Indica | 798 | 88.85% | 11.15% |
| All Japonica | 496 | 59.48% | 40.52% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 91.71% | 8.29% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 334 | 57.49% | 42.51% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0111808273 | C->T | INTERGENIC | None |