Detailed information of SNP:
|
SNP ID:
sf0111819593(Gbrowse)
Chromosome: chr01 Position: 11819593 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 60.08% | 39.92% |
| All Indica | 795 | 94.34% | 5.66% |
| All Japonica | 496 | 2.62% | 97.38% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 372 | 94.62% | 5.38% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 334 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0111819593 | T->C | LOC_Os01g21190(LOC_Os01g21190.1) | Non-Synonymous SNP |