Detailed information of SNP:
|
SNP ID:
sf0111821554(Gbrowse)
Chromosome: chr01 Position: 11821554 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 76.57% | 23.43% |
| All Indica | 795 | 96.23% | 3.77% |
| All Japonica | 496 | 42.74% | 57.26% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 372 | 96.24% | 3.76% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 334 | 42.81% | 57.19% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0111821554 | T->A | LOC_Os01g21190(LOC_Os01g21190.1) | INTRON |