Detailed information of SNP:
|
SNP ID:
sf0111836621(Gbrowse)
Chromosome: chr01 Position: 11836621 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 85.88% | 14.12% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 494 | 61.94% | 38.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 332 | 60.24% | 39.76% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0111836621 | C->T | LOC_Os01g21210(LOC_Os01g21210.1) | Synonymous |