Detailed information of SNP:
|
SNP ID:
sf0111857154(Gbrowse)
Chromosome: chr01 Position: 11857154 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1379 | 97.10% | 2.90% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 460 | 92.39% | 7.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 309 | 99.68% | 0.32% |
| Tropical Japonica | 90 | 78.89% | 21.11% |
| Japonica Intermediate | 61 | 75.41% | 24.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0111857154 | T->C | LOC_Os01g21240(LOC_Os01g21240.1) | Non-Synonymous SNP |