Detailed information of SNP:
|
SNP ID:
sf0111927615(Gbrowse)
Chromosome: chr01 Position: 11927615 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 86.64% | 13.36% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 485 | 64.12% | 35.88% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 325 | 63.69% | 36.31% |
| Tropical Japonica | 92 | 61.96% | 38.04% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0111927615 | C->T | INTERGENIC | None |