Detailed information of SNP:
|
SNP ID:
sf0111936801(Gbrowse)
Chromosome: chr01 Position: 11936801 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 75.27% | 24.73% |
| All Indica | 779 | 94.61% | 5.39% |
| All Japonica | 494 | 43.32% | 56.68% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 367 | 95.10% | 4.90% |
| Indica II | 207 | 95.17% | 4.83% |
| Indica Intermediate | 205 | 93.17% | 6.83% |
| Temperate Japonica | 335 | 43.28% | 56.72% |
| Tropical Japonica | 91 | 49.45% | 50.55% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0111936801 | T->C | INTERGENIC | None |