Detailed information of SNP:
|
SNP ID:
sf0111971546(Gbrowse)
Chromosome: chr01 Position: 11971546 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 68.15% | 31.85% |
| All Indica | 799 | 82.48% | 17.52% |
| All Japonica | 497 | 43.86% | 56.14% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 89.33% | 10.67% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 62.09% | 37.91% |
| Temperate Japonica | 335 | 43.58% | 56.42% |
| Tropical Japonica | 94 | 50.00% | 50.00% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0111971546 | C->T | INTERGENIC | None |