Detailed information of SNP:
|
SNP ID:
sf0112045139(Gbrowse)
Chromosome: chr01 Position: 12045139 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1315 | 83.73% | 16.27% |
| All Indica | 706 | 95.47% | 4.53% |
| All Japonica | 494 | 63.77% | 36.23% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 326 | 96.32% | 3.68% |
| Indica II | 188 | 93.62% | 6.38% |
| Indica Intermediate | 192 | 95.83% | 4.17% |
| Temperate Japonica | 334 | 58.98% | 41.02% |
| Tropical Japonica | 92 | 69.57% | 30.43% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0112045139 | T->C | LOC_Os01g21536(LOC_Os01g21536.1) | Non-Synonymous SNP |