Detailed information of SNP:
|
SNP ID:
sf0112053931(Gbrowse)
Chromosome: chr01 Position: 12053931 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1369 | 60.26% | 39.74% |
| All Indica | 755 | 96.42% | 3.58% |
| All Japonica | 497 | 4.23% | 95.77% |
| Aus | 65 | 78.46% | 21.54% |
| Indica I | 353 | 98.02% | 1.98% |
| Indica II | 197 | 95.94% | 4.06% |
| Indica Intermediate | 205 | 94.15% | 5.85% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0112053931 | C->G | INTERGENIC | None |