Detailed information of SNP:
|
SNP ID:
sf0112108794(Gbrowse)
Chromosome: chr01 Position: 12108794 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 87.45% | 12.55% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 490 | 65.10% | 34.90% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 332 | 62.65% | 37.35% |
| Tropical Japonica | 92 | 53.26% | 46.74% |
| Japonica Intermediate | 66 | 93.94% | 6.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0112108794 | C->T | LOC_Os01g21610(LOC_Os01g21610.1) | Synonymous |