Detailed information of SNP:
|
SNP ID:
sf0112171784(Gbrowse)
Chromosome: chr01 Position: 12171784 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 72.05% | 27.95% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 496 | 31.45% | 68.55% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 35.82% | 64.18% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 67 | 34.33% | 65.67% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0112171784 | A->G | INTERGENIC | None |