Detailed information of SNP:
|
SNP ID:
sf0112184592(Gbrowse)
Chromosome: chr01 Position: 12184592 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 97.07% | 2.93% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 479 | 92.28% | 7.72% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 322 | 90.37% | 9.63% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 90.62% | 9.38% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0112184592 | C->T | LOC_Os01g21710(LOC_Os01g21710.1) | Synonymous |