Detailed information of SNP:
|
SNP ID:
sf0112191525(Gbrowse)
Chromosome: chr01 Position: 12191525 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 56.52% | 43.48% |
| All Indica | 799 | 77.22% | 22.78% |
| All Japonica | 490 | 16.33% | 83.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 211 | 54.50% | 45.50% |
| Temperate Japonica | 330 | 15.15% | 84.85% |
| Tropical Japonica | 93 | 31.18% | 68.82% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0112191525 | G->A | INTERGENIC | None |