Detailed information of SNP:
|
SNP ID:
sf0112195259(Gbrowse)
Chromosome: chr01 Position: 12195259 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 85.26% | 14.74% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 489 | 61.55% | 38.45% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 329 | 58.97% | 41.03% |
| Tropical Japonica | 92 | 69.57% | 30.43% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0112195259 | T->C | INTERGENIC | None |