Detailed information of SNP:
|
SNP ID:
sf0112214145(Gbrowse)
Chromosome: chr01 Position: 12214145 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 88.70% | 11.30% |
| All Indica | 780 | 82.44% | 17.56% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 373 | 93.83% | 6.17% |
| Indica II | 205 | 80.00% | 20.00% |
| Indica Intermediate | 202 | 63.86% | 36.14% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0112214145 | C->T | INTERGENIC | None |