Detailed information of SNP:
|
SNP ID:
sf0112448650(Gbrowse)
Chromosome: chr01 Position: 12448650 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1191 | 85.89% | 14.11% |
| All Indica | 618 | 95.79% | 4.21% |
| All Japonica | 479 | 70.98% | 29.02% |
| Aus | 42 | 97.62% | 2.38% |
| Indica I | 281 | 94.31% | 5.69% |
| Indica II | 161 | 98.76% | 1.24% |
| Indica Intermediate | 176 | 95.45% | 4.55% |
| Temperate Japonica | 325 | 66.46% | 33.54% |
| Tropical Japonica | 92 | 84.78% | 15.22% |
| Japonica Intermediate | 62 | 74.19% | 25.81% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0112448650 | T->C | INTERGENIC | None |