Detailed information of SNP:
|
SNP ID:
sf0112503948(Gbrowse)
Chromosome: chr01 Position: 12503948 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1349 | 89.03% | 10.97% |
| All Indica | 731 | 80.03% | 19.97% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 336 | 66.67% | 33.33% |
| Indica II | 205 | 96.10% | 3.90% |
| Indica Intermediate | 190 | 86.32% | 13.68% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0112503948 | C->T | INTERGENIC | None |