Detailed information of SNP:



SNP ID: sf0112524141(Gbrowse)

Chromosome: chr01

Position: 12524141
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1419 97.82% 2.18%
All Indica799 96.12% 3.88%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I375 99.47% 0.53%
Indica II213 89.20% 10.80%
Indica Intermediate211 97.16% 2.84%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0112524141 G->A LOC_Os01g22270(LOC_Os01g22270.1) Non-Synonymous SNP