Detailed information of SNP:



SNP ID: sf0112569762(Gbrowse)

Chromosome: chr01

Position: 12569762
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1415 59.93% 40.07%
All Indica797 92.85% 7.15%
All Japonica496 3.43% 96.57%
Aus67 100.00% 0.00%
Indica I374 98.66% 1.34%
Indica II212 90.57% 9.43%
Indica Intermediate211 84.83% 15.17%
Temperate Japonica335 1.49% 98.51%
Tropical Japonica93 9.68% 90.32%
Japonica Intermediate68 4.41% 95.59%
Group VI/Aromatic14 0.00% 100.00%
Intermediate41 58.54% 41.46%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0112569762 A->G INTERGENIC None