Detailed information of SNP:
|
SNP ID:
sf0112623348(Gbrowse)
Chromosome: chr01 Position: 12623348 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1285 | 87.00% | 13.00% |
| All Indica | 696 | 77.59% | 22.41% |
| All Japonica | 493 | 100.00% | 0.00% |
| Aus | 44 | 84.09% | 15.91% |
| Indica I | 338 | 90.24% | 9.76% |
| Indica II | 170 | 50.59% | 49.41% |
| Indica Intermediate | 188 | 79.26% | 20.74% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0112623348 | G->A | INTERGENIC | None |