Detailed information of SNP:
|
SNP ID:
sf0112634629(Gbrowse)
Chromosome: chr01 Position: 12634629 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 79.07% | 20.93% |
| All Indica | 799 | 80.60% | 19.40% |
| All Japonica | 497 | 87.12% | 12.88% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 53.99% | 46.01% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 93.73% | 6.27% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0112634629 | A->T | INTERGENIC | None |