Detailed information of SNP:
|
SNP ID:
sf0112657577(Gbrowse)
Chromosome: chr01 Position: 12657577 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1337 | 62.90% | 37.10% |
| All Indica | 771 | 94.68% | 5.32% |
| All Japonica | 446 | 4.26% | 95.74% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 186 | 95.70% | 4.30% |
| Indica Intermediate | 210 | 86.67% | 13.33% |
| Temperate Japonica | 320 | 1.56% | 98.44% |
| Tropical Japonica | 78 | 14.10% | 85.90% |
| Japonica Intermediate | 48 | 6.25% | 93.75% |
| Group VI/Aromatic | 11 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0112657577 | T->C | INTERGENIC | None |