Detailed information of SNP:
|
SNP ID:
sf0112708842(Gbrowse)
Chromosome: chr01 Position: 12708842 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 64.57% | 35.43% |
| All Indica | 797 | 96.36% | 3.64% |
| All Japonica | 483 | 9.32% | 90.68% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 331 | 6.95% | 93.05% |
| Tropical Japonica | 87 | 17.24% | 82.76% |
| Japonica Intermediate | 65 | 10.77% | 89.23% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 37 | 59.46% | 40.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0112708842 | T->G | INTERGENIC | None |