Detailed information of SNP:
|
SNP ID:
sf0112713223(Gbrowse)
Chromosome: chr01 Position: 12713223 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1233 | 84.10% | 15.90% |
| All Indica | 680 | 79.85% | 20.15% |
| All Japonica | 456 | 98.68% | 1.32% |
| Aus | 52 | 19.23% | 80.77% |
| Indica I | 326 | 88.96% | 11.04% |
| Indica II | 162 | 58.64% | 41.36% |
| Indica Intermediate | 192 | 82.29% | 17.71% |
| Temperate Japonica | 317 | 98.74% | 1.26% |
| Tropical Japonica | 80 | 100.00% | 0.00% |
| Japonica Intermediate | 59 | 96.61% | 3.39% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 34 | 67.65% | 32.35% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0112713223 | T->C | INTERGENIC | None |