Detailed information of SNP:
|
SNP ID:
sf0112717083(Gbrowse)
Chromosome: chr01 Position: 12717083 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 60.74% | 39.26% |
| All Indica | 790 | 95.06% | 4.94% |
| All Japonica | 496 | 3.43% | 96.57% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 370 | 94.32% | 5.68% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0112717083 | C->T | INTERGENIC | None |