Detailed information of SNP:
|
SNP ID:
sf0112762809(Gbrowse)
Chromosome: chr01 Position: 12762809 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 57.99% | 42.01% |
| All Indica | 795 | 87.30% | 12.70% |
| All Japonica | 497 | 4.23% | 95.77% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 98.92% | 1.08% |
| Indica II | 213 | 63.38% | 36.62% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0112762809 | G->T | INTERGENIC | None |