Detailed information of SNP:
|
SNP ID:
sf0112777968(Gbrowse)
Chromosome: chr01 Position: 12777968 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 63.43% | 36.57% |
| All Indica | 791 | 38.05% | 61.95% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 371 | 36.66% | 63.34% |
| Indica II | 210 | 50.00% | 50.00% |
| Indica Intermediate | 210 | 28.57% | 71.43% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0112777968 | G->A | INTERGENIC | None |