Detailed information of SNP:
|
SNP ID:
sf0112793988(Gbrowse)
Chromosome: chr01 Position: 12793988 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1341 | 94.03% | 5.97% |
| All Indica | 726 | 95.18% | 4.82% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 64 | 39.06% | 60.94% |
| Indica I | 342 | 99.12% | 0.88% |
| Indica II | 177 | 85.31% | 14.69% |
| Indica Intermediate | 207 | 97.10% | 2.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0112793988 | C->T | INTERGENIC | None |