Detailed information of SNP:
|
SNP ID:
sf0112793991(Gbrowse)
Chromosome: chr01 Position: 12793991 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1336 | 93.34% | 6.66% |
| All Indica | 724 | 94.61% | 5.39% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 63 | 33.33% | 66.67% |
| Indica I | 344 | 97.97% | 2.03% |
| Indica II | 175 | 85.71% | 14.29% |
| Indica Intermediate | 205 | 96.59% | 3.41% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0112793991 | C->T | INTERGENIC | None |